Index

_

__init__() (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep method) (cubie.integrators.algorithms.DIRKStep method) (cubie.integrators.algorithms.ERKStep method) (cubie.integrators.algorithms.FIRKStep method) (cubie.integrators.algorithms.GenericRosenbrockWStep method) (cubie.integrators.BackwardsEulerStep method) (cubie.integrators.CrankNicolsonStep method) (cubie.integrators.ExplicitEulerStep method) (cubie.integrators.IVPLoop method) (cubie.integrators.matrix_free_solvers.LinearSolver method) (cubie.integrators.matrix_free_solvers.NewtonKrylov method) (cubie.integrators.step_control.base_step_controller.BaseStepController method) (cubie.odesystems.BaseODE method) (cubie.odesystems.SymbolicODE method) (cubie.odesystems.SystemValues method) (cubie.outputhandling.summarymetrics.d2xdt2_extrema.D2xdt2Extrema method) (cubie.outputhandling.summarymetrics.d2xdt2_max.D2xdt2Max method) (cubie.outputhandling.summarymetrics.d2xdt2_min.D2xdt2Min method) (cubie.outputhandling.summarymetrics.dxdt_extrema.DxdtExtrema method) (cubie.outputhandling.summarymetrics.dxdt_max.DxdtMax method) (cubie.outputhandling.summarymetrics.dxdt_min.DxdtMin method) (cubie.outputhandling.summarymetrics.extrema.Extrema method) (cubie.outputhandling.summarymetrics.max.Max method) (cubie.outputhandling.summarymetrics.max_magnitude.MaxMagnitude method) (cubie.outputhandling.summarymetrics.mean.Mean method) (cubie.outputhandling.summarymetrics.mean_std_rms.MeanStdRms method) (cubie.outputhandling.summarymetrics.min.Min method) (cubie.outputhandling.summarymetrics.negative_peaks.NegativePeaks method) (cubie.outputhandling.summarymetrics.peaks.Peaks method) (cubie.outputhandling.summarymetrics.rms.RMS method) (cubie.outputhandling.summarymetrics.std.Std method) _add_auto_proportion() (cubie.memory.mem_manager.MemoryManager method) _add_manual_proportion() (cubie.memory.mem_manager.MemoryManager method) _apply_combined_metrics() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) _arrays_equal() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method)

_buffer_sizes (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics attribute) (in module cubie.outputhandling.summarymetrics) _check_for_no_outputs() (cubie.outputhandling.OutputConfig method) _check_requests() (cubie.memory.mem_manager.MemoryManager method) _check_saved_indices() (cubie.outputhandling.OutputConfig method) _check_summarised_indices() (cubie.outputhandling.OutputConfig method) _convert_host_to_numpy() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) _convert_host_to_pinned() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) _convert_symbol_keys() (cubie.odesystems.SystemValues method) _ensure_sane_bounds() (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController method) (cubie.integrators.step_control.base_step_controller.BaseStepController method) _get_chunk_events() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) _get_jvp_exprs() (cubie.odesystems.SymbolicODE method) _get_size() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) _invalidate_cache() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) _invalidate_hook() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) _metric_objects (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics attribute) (in module cubie.outputhandling.summarymetrics) _names (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics attribute) (in module cubie.outputhandling.summarymetrics) _on_allocation() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) _on_allocation_complete() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) _output_sizes (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics attribute) (in module cubie.outputhandling.summarymetrics) _params (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics attribute) (in module cubie.outputhandling.summarymetrics) _rebalance_auto_pool() (cubie.memory.mem_manager.MemoryManager method) _resolve_step_params() (cubie.integrators.FixedStepController method) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController method) (cubie.integrators.step_control.base_step_controller.BaseStepController method) _setup_cuda_events() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) _setup_memory_manager() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) _update_host_array() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) _validate_config() (cubie.integrators.step_control.fixed_step_controller.FixedStepControlConfig method) _validate_index_arrays() (cubie.outputhandling.OutputConfig method) _validate_timing_parameters() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method)

A

accumulator_location (cubie.integrators.algorithms.generic_dirk.DIRKStepConfig attribute) active_outputs (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.batchsolving.solveresult.SolveResult property) ActiveOutputs (class in cubie.batchsolving.BatchSolverConfig) AdaptiveIController (class in cubie.integrators) AdaptivePIController (class in cubie.integrators) AdaptivePIDController (class in cubie.integrators) AdaptiveStepControlConfig (class in cubie.integrators.step_control.adaptive_step_controller) add_entry() (cubie.odesystems.SystemValues method) algorithm (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) algorithm_order (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig attribute) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController property) all_input_labels (cubie.batchsolving.SystemInterface.SystemInterface property) all_output_labels (cubie.batchsolving.SystemInterface.SystemInterface property)

all_stages_n (cubie.integrators.algorithms.generic_firk.FIRKStepConfig property) allocate() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) (cubie.memory.mem_manager.MemoryManager method) allocate_all() (cubie.memory.mem_manager.MemoryManager method) allocate_queue() (cubie.memory.mem_manager.MemoryManager method) array (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray property) array_names() (cubie.batchsolving.arrays.BaseArrayManager.ArrayContainer method) ArrayContainer (class in cubie.batchsolving.arrays.BaseArrayManager) as_numpy (cubie.batchsolving.solveresult.SolveResult property) as_numpy_per_summary (cubie.batchsolving.solveresult.SolveResult property) as_pandas (cubie.batchsolving.solveresult.SolveResult property) atol (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig attribute) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController property) attach() (cubie.batchsolving.arrays.BaseArrayManager.ArrayContainer method) auto_pool_proportion (cubie.memory.mem_manager.MemoryManager property)

B

BackwardsEulerPCStep (class in cubie.integrators) BackwardsEulerStep (class in cubie.integrators) base_state_placeholder_location (cubie.integrators.algorithms.generic_rosenbrock_w.RosenbrockWStepConfig attribute) BaseAdaptiveStepController (class in cubie.integrators.step_control.adaptive_step_controller) BaseAlgorithmStep (class in cubie.integrators.algorithms.base_algorithm_step) BaseArrayManager (class in cubie.batchsolving.arrays.BaseArrayManager) BaseODE (class in cubie.odesystems) BaseStepConfig (class in cubie.integrators.algorithms.base_algorithm_step) BaseStepController (class in cubie.integrators.step_control.base_step_controller) BatchSolverKernel (class in cubie.batchsolving.BatchSolverKernel) beta (cubie.integrators.ImplicitStepConfig property) (cubie.odesystems.ODEData property) buffer_offsets() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) buffer_sizes() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) buffer_sizes_dict (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) build() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) (cubie.integrators.FixedStepController method) (cubie.integrators.IVPLoop method) (cubie.integrators.matrix_free_solvers.LinearSolver method) (cubie.integrators.matrix_free_solvers.NewtonKrylov method) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController method) (cubie.integrators.step_control.base_step_controller.BaseStepController method) (cubie.odesystems.BaseODE method) (cubie.odesystems.SymbolicODE method) (cubie.outputhandling.OutputFunctions method) (cubie.outputhandling.summarymetrics.d2xdt2_extrema.D2xdt2Extrema method) (cubie.outputhandling.summarymetrics.d2xdt2_max.D2xdt2Max method) (cubie.outputhandling.summarymetrics.d2xdt2_min.D2xdt2Min method) (cubie.outputhandling.summarymetrics.dxdt_extrema.DxdtExtrema method) (cubie.outputhandling.summarymetrics.dxdt_max.DxdtMax method) (cubie.outputhandling.summarymetrics.dxdt_min.DxdtMin method) (cubie.outputhandling.summarymetrics.extrema.Extrema method) (cubie.outputhandling.summarymetrics.max.Max method) (cubie.outputhandling.summarymetrics.max_magnitude.MaxMagnitude method) (cubie.outputhandling.summarymetrics.mean.Mean method) (cubie.outputhandling.summarymetrics.mean_std_rms.MeanStdRms method) (cubie.outputhandling.summarymetrics.min.Min method) (cubie.outputhandling.summarymetrics.negative_peaks.NegativePeaks method) (cubie.outputhandling.summarymetrics.peaks.Peaks method) (cubie.outputhandling.summarymetrics.rms.RMS method) (cubie.outputhandling.summarymetrics.std.Std method)

build_controller() (cubie.integrators.AdaptiveIController method) (cubie.integrators.AdaptivePIController method) (cubie.integrators.AdaptivePIDController method) (cubie.integrators.GustafssonController method) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController method) build_grid() (cubie.batchsolving.solver.Solver method) build_implicit_helpers() (cubie.integrators.algorithms.DIRKStep method) (cubie.integrators.algorithms.FIRKStep method) (cubie.integrators.algorithms.GenericRosenbrockWStep method) build_kernel() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) build_step() (cubie.integrators.algorithms.DIRKStep method) (cubie.integrators.algorithms.ERKStep method) (cubie.integrators.algorithms.FIRKStep method) (cubie.integrators.algorithms.GenericRosenbrockWStep method) (cubie.integrators.BackwardsEulerPCStep method) (cubie.integrators.BackwardsEulerStep method) (cubie.integrators.CrankNicolsonStep method) (cubie.integrators.ExplicitEulerStep method)

C

C (cubie.integrators.algorithms.generic_rosenbrockw_tableaus.RosenbrockTableau attribute) cache_config (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) cache_dir (cubie.batchsolving.solver.Solver property) cache_enabled (cubie.batchsolving.solver.Solver property) cache_mode (cubie.batchsolving.solver.Solver property) cached_aux_count (cubie.odesystems.ODECache attribute) cached_auxiliaries_location (cubie.integrators.algorithms.generic_rosenbrock_w.RosenbrockWStepConfig attribute) cached_auxiliary_count (cubie.integrators.algorithms.GenericRosenbrockWStep property) calculate_cached_jvp (cubie.odesystems.ODECache attribute) can_reuse_accepted_start (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.base_algorithm_step.BaseStepConfig property) cap() (cubie.memory.mem_manager.MemoryManager method) change_stream_group() (cubie.memory.mem_manager.MemoryManager method) check_incoming_arrays() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) check_sizes() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) check_type() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) chunk_length (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray attribute) chunk_slice() (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray method) chunked_shape (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray attribute) chunks (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) cleave_time() (cubie.batchsolving.solveresult.SolveResult static method) combine_summaries_array() (cubie.batchsolving.solveresult.SolveResult static method) combine_time_domain_arrays() (cubie.batchsolving.solveresult.SolveResult static method)

compile_flags (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.IVPLoop property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) compute_chunked_shapes() (cubie.memory.mem_manager.MemoryManager method) config_hash (cubie.odesystems.BaseODE property) constant_units (cubie.odesystems.SymbolicODE property) constants (cubie.odesystems.BaseODE property) (cubie.odesystems.ODEData attribute) (cubie.odesystems.SystemSizes attribute) constants_gui() (cubie.odesystems.SymbolicODE method) controller_defaults (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) convert_output_labels() (cubie.batchsolving.solver.Solver method) CrankNicolsonStep (class in cubie.integrators) create() (cubie.odesystems.SymbolicODE class method) create_host_array() (cubie.memory.mem_manager.MemoryManager method) create_ODE_system() (in module cubie.odesystems) cubie.integrators.matrix_free_solvers module cupy_ext_stream (in module cubie.memory.cupy_emm) CuPyAsyncNumbaManager (class in cubie.memory.cupy_emm) CuPySyncNumbaManager (class in cubie.memory.cupy_emm) current_cupy_stream() (in module cubie.memory.cupy_emm)

D

D2xdt2Extrema (class in cubie.outputhandling.summarymetrics.d2xdt2_extrema) D2xdt2Max (class in cubie.outputhandling.summarymetrics.d2xdt2_max) D2xdt2Min (class in cubie.outputhandling.summarymetrics.d2xdt2_min) deadband_max (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig property) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController property) deadband_min (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig property) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController property) default_memmgr (in module cubie.memory) default_shape (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray attribute) delete_all() (cubie.batchsolving.arrays.BaseArrayManager.ArrayContainer method) delta_location (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute), [1] device (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager attribute) (cubie.batchsolving.arrays.BatchInputArrays.InputArrays attribute) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays attribute) device_driver_coefficients (cubie.batchsolving.arrays.BatchInputArrays.InputArrays property) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) device_factory() (cubie.batchsolving.arrays.BatchInputArrays.InputArrayContainer class method) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrayContainer class method) device_function (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.integrators.IVPLoop property) (cubie.integrators.matrix_free_solvers.LinearSolver property) (cubie.integrators.matrix_free_solvers.NewtonKrylov property) device_initial_values (cubie.batchsolving.arrays.BatchInputArrays.InputArrays property) device_iteration_counters (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) device_observable_summaries (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) device_observables (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) device_parameters (cubie.batchsolving.arrays.BatchInputArrays.InputArrays property) device_state (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) device_state_summaries (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) device_status_codes (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) diagonal() (cubie.integrators.algorithms.generic_dirk_tableaus.DIRKTableau method), [1] DIRK_TABLEAU_REGISTRY (in module cubie.integrators.algorithms) DIRKStep (class in cubie.integrators.algorithms) DIRKStepConfig (class in cubie.integrators.algorithms.generic_dirk) DIRKTableau (class in cubie.integrators.algorithms.generic_dirk_tableaus)

disable_profiling() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) (cubie.batchsolving.solver.Solver method) driver_coefficients (cubie.batchsolving.arrays.BatchInputArrays.InputArrayContainer attribute) (cubie.batchsolving.arrays.BatchInputArrays.InputArrays property) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) driver_del_t (cubie.integrators.algorithms.generic_rosenbrock_w.RosenbrockWStepConfig attribute) driver_units (cubie.odesystems.SymbolicODE property) drivers (cubie.odesystems.SystemSizes attribute) dt (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.IVPLoop property) (cubie.integrators.SingleIntegratorRun property) (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig property) (cubie.integrators.step_control.base_step_controller.BaseStepController property) (cubie.integrators.step_control.fixed_step_controller.FixedStepControlConfig property) DT_EFF_EFFECTIVELY_ZERO (cubie.integrators.IntegratorReturnCodes attribute) dt_max (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig property) (cubie.integrators.step_control.base_step_controller.BaseStepController property) (cubie.integrators.step_control.fixed_step_controller.FixedStepControlConfig property) dt_min (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig property) (cubie.integrators.step_control.base_step_controller.BaseStepController property) (cubie.integrators.step_control.fixed_step_controller.FixedStepControlConfig property) dtype (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray attribute) duration (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) dxdt (cubie.odesystems.ODECache attribute) DxdtExtrema (class in cubie.outputhandling.summarymetrics.dxdt_extrema) DxdtMax (class in cubie.outputhandling.summarymetrics.dxdt_max) DxdtMin (class in cubie.outputhandling.summarymetrics.dxdt_min)

E

empty (cubie.odesystems.SystemValues property) enable_profiling() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) (cubie.batchsolving.solver.Solver method) ERK_TABLEAU_REGISTRY (in module cubie.integrators.algorithms) ERKStep (class in cubie.integrators.algorithms) ERKStepConfig (class in cubie.integrators.algorithms.generic_erk) ERKTableau (class in cubie.integrators.algorithms.generic_erk_tableaus) evaluate_driver_at_t (cubie.integrators.algorithms.base_algorithm_step.BaseStepConfig attribute) (cubie.integrators.IVPLoop property) evaluate_f (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.base_algorithm_step.BaseStepConfig attribute) (cubie.integrators.SingleIntegratorRun property) (cubie.odesystems.BaseODE property)

evaluate_observables (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.base_algorithm_step.BaseStepConfig attribute) (cubie.integrators.IVPLoop property) (cubie.odesystems.BaseODE property) ExplicitEulerStep (class in cubie.integrators) ExplicitStepConfig (class in cubie.integrators) Extrema (class in cubie.outputhandling.summarymetrics.extrema)

F

finalise() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) (cubie.batchsolving.arrays.BatchInputArrays.InputArrays method) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays method) FIRK_TABLEAU_REGISTRY (in module cubie.integrators.algorithms) FIRKStep (class in cubie.integrators.algorithms) FIRKStepConfig (class in cubie.integrators.algorithms.generic_firk) FIRKTableau (class in cubie.integrators.algorithms.generic_firk_tableaus) first_same_as_last (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.base_algorithm_step.BaseStepConfig property) (cubie.integrators.algorithms.generic_erk.ERKStepConfig property) FixedStepControlConfig (class in cubie.integrators.step_control.fixed_step_controller)

FixedStepController (class in cubie.integrators) free() (cubie.memory.mem_manager.MemoryManager method) free_all() (cubie.memory.mem_manager.MemoryManager method) from_BaseODE_initargs() (cubie.odesystems.ODEData class method) from_compile_flags() (cubie.batchsolving.BatchSolverConfig.ActiveOutputs class method) from_device() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) (cubie.memory.mem_manager.MemoryManager method) from_loop_settings() (cubie.outputhandling.OutputConfig class method) from_solver() (cubie.batchsolving.arrays.BatchInputArrays.InputArrays class method) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays class method) (cubie.batchsolving.solveresult.SolveResult class method) from_system() (cubie.batchsolving.SystemInterface.SystemInterface class method)

G

gamma (cubie.integrators.algorithms.generic_rosenbrockw_tableaus.RosenbrockTableau attribute) (cubie.integrators.GustafssonController property) (cubie.integrators.ImplicitStepConfig property) (cubie.integrators.step_control.gustafsson_controller.GustafssonStepControlConfig property) (cubie.odesystems.ODEData property) gamma_stages (cubie.integrators.algorithms.generic_rosenbrockw_tableaus.RosenbrockTableau attribute) GenericRosenbrockWStep (class in cubie.integrators.algorithms) get_algorithm_step() (in module cubie.integrators) get_array() (cubie.batchsolving.arrays.BaseArrayManager.ArrayContainer method) get_available_memory() (cubie.memory.mem_manager.MemoryManager method) get_chunk_parameters() (cubie.memory.mem_manager.MemoryManager method) get_constants_info() (cubie.odesystems.SymbolicODE method) get_controller() (in module cubie.integrators) get_index_of_key() (cubie.odesystems.SystemValues method) get_indices() (cubie.odesystems.SystemValues method) get_labels() (cubie.batchsolving.SystemInterface.SystemInterface method) (cubie.odesystems.SystemValues method)

get_managed_array() (cubie.batchsolving.arrays.BaseArrayManager.ArrayContainer method) get_memory_info() (cubie.memory.mem_manager.MemoryManager method) get_observable_indices() (cubie.batchsolving.solver.Solver method) get_parameters_info() (cubie.odesystems.SymbolicODE method) get_solver_helper() (cubie.odesystems.BaseODE method) (cubie.odesystems.SymbolicODE method) get_solver_helper_fn (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.base_algorithm_step.BaseStepConfig attribute) get_state_indices() (cubie.batchsolving.solver.Solver method) get_states_info() (cubie.odesystems.SymbolicODE method) get_stream() (cubie.memory.mem_manager.MemoryManager method) get_stream_group() (cubie.memory.mem_manager.MemoryManager method) get_values() (cubie.odesystems.SystemValues method) GustafssonController (class in cubie.integrators) GustafssonStepControlConfig (class in cubie.integrators.step_control.gustafsson_controller)

H

has_summary_outputs (cubie.outputhandling.OutputFunctions property) has_time_domain_outputs (cubie.outputhandling.OutputFunctions property) host (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager attribute) (cubie.batchsolving.arrays.BatchInputArrays.InputArrays attribute) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays attribute)

host_factory() (cubie.batchsolving.arrays.BatchInputArrays.InputArrayContainer class method) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrayContainer class method)

I

implemented_metrics (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics property) ImplicitStepConfig (class in cubie.integrators) indices_dict (cubie.odesystems.SystemValues attribute) initial_states (cubie.odesystems.ODEData attribute) initial_values (cubie.batchsolving.arrays.BatchInputArrays.InputArrayContainer attribute) (cubie.batchsolving.arrays.BatchInputArrays.InputArrays property) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.odesystems.BaseODE property) initialise() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) (cubie.batchsolving.arrays.BatchInputArrays.InputArrays method) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays method) initialize() (cubie.memory.cupy_emm.CuPyAsyncNumbaManager method) (cubie.memory.cupy_emm.CuPySyncNumbaManager method) input_variables (cubie.batchsolving.solver.Solver property) InputArrayContainer (class in cubie.batchsolving.arrays.BatchInputArrays) InputArrays (class in cubie.batchsolving.arrays.BatchInputArrays) IntegratorReturnCodes (class in cubie.integrators) invalidate_all() (cubie.memory.mem_manager.MemoryManager method) is_adaptive (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.DIRKStep property) (cubie.integrators.algorithms.ERKStep property) (cubie.integrators.algorithms.FIRKStep property) (cubie.integrators.algorithms.GenericRosenbrockWStep property) (cubie.integrators.BackwardsEulerStep property) (cubie.integrators.CrankNicolsonStep property) (cubie.integrators.ExplicitEulerStep property) (cubie.integrators.IVPLoop property) (cubie.integrators.SingleIntegratorRun property) (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig property) (cubie.integrators.step_control.base_step_controller.BaseStepController property) (cubie.integrators.step_control.fixed_step_controller.FixedStepControlConfig property)

is_chunked (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager property) (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray attribute) is_grouped() (cubie.memory.mem_manager.MemoryManager method) is_implicit (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.DIRKStep property) (cubie.integrators.algorithms.FIRKStep property) (cubie.integrators.algorithms.GenericRosenbrockWStep property) is_multistage (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.DIRKStep property) (cubie.integrators.algorithms.ERKStep property) (cubie.integrators.algorithms.FIRKStep property) (cubie.integrators.algorithms.GenericRosenbrockWStep property) (cubie.integrators.BackwardsEulerStep property) (cubie.integrators.CrankNicolsonStep property) (cubie.integrators.ExplicitEulerStep property) iter_managed_arrays() (cubie.batchsolving.arrays.BaseArrayManager.ArrayContainer method) iteration_counters (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrayContainer attribute) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) (cubie.batchsolving.BatchSolverConfig.ActiveOutputs attribute) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.batchsolving.solveresult.SolveResult attribute) IVPLoop (class in cubie.integrators)

J

jacobian_aux_count (cubie.odesystems.SymbolicODE property)

K

kd (cubie.integrators.AdaptivePIDController property) (cubie.integrators.step_control.adaptive_PID_controller.PIDStepControlConfig property) kernel (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) keys_by_index (cubie.odesystems.SystemValues attribute) ki (cubie.integrators.AdaptivePIController property) (cubie.integrators.AdaptivePIDController property) (cubie.integrators.step_control.adaptive_PI_controller.PIStepControlConfig property) kp (cubie.integrators.AdaptivePIController property) (cubie.integrators.AdaptivePIDController property) (cubie.integrators.step_control.adaptive_PI_controller.PIStepControlConfig property)

krylov_atol (cubie.integrators.matrix_free_solvers.LinearSolver property) (cubie.integrators.matrix_free_solvers.NewtonKrylov property) krylov_iters_local_location (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute), [1] krylov_iters_out_location (cubie.integrators.algorithms.generic_rosenbrock_w.RosenbrockWStepConfig attribute) krylov_max_iters (cubie.integrators.matrix_free_solvers.LinearSolver property) (cubie.integrators.matrix_free_solvers.NewtonKrylov property) krylov_rtol (cubie.integrators.matrix_free_solvers.LinearSolver property) (cubie.integrators.matrix_free_solvers.NewtonKrylov property)

L

legend() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) limit_blocksize() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) linear_correction_type (cubie.integrators.matrix_free_solvers.LinearSolver property) (cubie.integrators.matrix_free_solvers.LinearSolverConfig attribute), [1] (cubie.integrators.matrix_free_solvers.NewtonKrylov property) linear_operator (cubie.odesystems.ODECache attribute) linear_operator_cached (cubie.odesystems.ODECache attribute) linear_solver (cubie.integrators.matrix_free_solvers.LinearSolverCache attribute), [1] linear_solver_function (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute), [1] LinearSolver (class in cubie.integrators.matrix_free_solvers)

LinearSolverCache (class in cubie.integrators.matrix_free_solvers) LinearSolverConfig (class in cubie.integrators.matrix_free_solvers) local_memory_elements (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.integrators.AdaptiveIController property) (cubie.integrators.AdaptivePIController property) (cubie.integrators.AdaptivePIDController property) (cubie.integrators.FixedStepController property) (cubie.integrators.GustafssonController property) (cubie.integrators.SingleIntegratorRun property) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController property) (cubie.integrators.step_control.base_step_controller.BaseStepController property)

M

M (cubie.integrators.ImplicitStepConfig attribute) make_constant() (cubie.odesystems.SymbolicODE method) make_parameter() (cubie.odesystems.SymbolicODE method) ManagedArray (class in cubie.batchsolving.arrays.BaseArrayManager) manual_pool_proportion (cubie.memory.mem_manager.MemoryManager property) mass (cubie.odesystems.ODEData property) Max (class in cubie.outputhandling.summarymetrics.max) max_gain (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig property) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController property) max_iters (cubie.integrators.matrix_free_solvers.LinearSolverConfig attribute) (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute) MAX_LINEAR_ITERATIONS_EXCEEDED (cubie.integrators.IntegratorReturnCodes attribute) (cubie.integrators.matrix_free_solvers.SolverRetCodes attribute) MAX_LOOP_ITERS_EXCEEDED (cubie.integrators.IntegratorReturnCodes attribute) MAX_NEWTON_ITERATIONS_EXCEEDED (cubie.integrators.IntegratorReturnCodes attribute) (cubie.integrators.matrix_free_solvers.SolverRetCodes attribute) max_observables (cubie.outputhandling.OutputConfig property) max_states (cubie.outputhandling.OutputConfig property)

MaxMagnitude (class in cubie.outputhandling.summarymetrics.max_magnitude) Mean (class in cubie.outputhandling.summarymetrics.mean) MeanStdRms (class in cubie.outputhandling.summarymetrics.mean_std_rms) mem_proportion (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) memalloc() (cubie.memory.cupy_emm.CuPyAsyncNumbaManager method) (cubie.memory.cupy_emm.CuPySyncNumbaManager method) memory_manager (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) memory_type (cubie.batchsolving.arrays.BaseArrayManager.ArrayContainer property) (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray attribute) MemoryManager (class in cubie.memory.mem_manager) merge_variable_inputs() (cubie.batchsolving.SystemInterface.SystemInterface method) merge_variable_labels_and_idxs() (cubie.batchsolving.SystemInterface.SystemInterface method) Min (class in cubie.outputhandling.summarymetrics.min) min_gain (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig property) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController property) module cubie.integrators.matrix_free_solvers

N

n (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.base_algorithm_step.BaseStepConfig attribute) (cubie.integrators.matrix_free_solvers.LinearSolverConfig attribute) (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute) (cubie.integrators.step_control.base_step_controller.BaseStepController property) (cubie.integrators.step_control.fixed_step_controller.FixedStepControlConfig attribute) (cubie.odesystems.SystemValues attribute) n_drivers (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.base_algorithm_step.BaseStepConfig attribute) n_saved_observables (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) n_saved_states (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) n_stage_linear_operator (cubie.odesystems.ODECache attribute) n_stage_neumann_preconditioner (cubie.odesystems.ODECache attribute) n_stage_residual (cubie.odesystems.ODECache attribute) n_summarised_observables (cubie.outputhandling.OutputConfig property) n_summarised_states (cubie.outputhandling.OutputConfig property) name (cubie.odesystems.SystemValues attribute) names (cubie.odesystems.SystemValues property) nb_stream (in module cubie.memory.cupy_emm) needs_chunked_transfer (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray property) NegativePeaks (class in cubie.outputhandling.summarymetrics.negative_peaks) neumann_preconditioner (cubie.odesystems.ODECache attribute) neumann_preconditioner_cached (cubie.odesystems.ODECache attribute) newton_atol (cubie.integrators.matrix_free_solvers.NewtonKrylov property) NEWTON_BACKTRACKING_NO_SUITABLE_STEP (cubie.integrators.IntegratorReturnCodes attribute) (cubie.integrators.matrix_free_solvers.SolverRetCodes attribute) newton_damping (cubie.integrators.matrix_free_solvers.NewtonKrylov property) (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute) (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig property)

newton_krylov_solver (cubie.integrators.matrix_free_solvers.NewtonKrylovCache attribute), [1] newton_max_backtracks (cubie.integrators.matrix_free_solvers.NewtonKrylov property) (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute), [1] newton_max_iters (cubie.integrators.GustafssonController property) (cubie.integrators.matrix_free_solvers.NewtonKrylov property) (cubie.integrators.step_control.gustafsson_controller.GustafssonStepControlConfig property) newton_rtol (cubie.integrators.matrix_free_solvers.NewtonKrylov property) NewtonKrylov (class in cubie.integrators.matrix_free_solvers) NewtonKrylovCache (class in cubie.integrators.matrix_free_solvers) NewtonKrylovConfig (class in cubie.integrators.matrix_free_solvers) nonlinear_solver (cubie.integrators.algorithms.base_algorithm_step.StepCache attribute) norm_device_function (cubie.integrators.matrix_free_solvers.LinearSolverConfig attribute) (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute) num_chunks (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray attribute) num_constants (cubie.odesystems.BaseODE property) (cubie.odesystems.ODEData property) num_drivers (cubie.odesystems.BaseODE property) (cubie.odesystems.ODEData attribute) num_observables (cubie.odesystems.BaseODE property) (cubie.odesystems.ODEData property) num_parameters (cubie.odesystems.BaseODE property) (cubie.odesystems.ODEData property) num_runs (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager attribute) (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray attribute) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) num_states (cubie.odesystems.BaseODE property) (cubie.odesystems.ODEData property)

O

observable_indices() (cubie.batchsolving.SystemInterface.SystemInterface method) observable_labels() (cubie.batchsolving.SystemInterface.SystemInterface method) observable_summaries (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrayContainer attribute) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) (cubie.batchsolving.BatchSolverConfig.ActiveOutputs attribute) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) observable_summaries_buffer_height (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) observable_summaries_output_height (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) observable_units (cubie.odesystems.SymbolicODE property) observables (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrayContainer attribute) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) (cubie.batchsolving.BatchSolverConfig.ActiveOutputs attribute) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.odesystems.BaseODE property) (cubie.odesystems.ODECache attribute) (cubie.odesystems.ODEData attribute) (cubie.odesystems.SystemSizes attribute) ODECache (class in cubie.odesystems) ODEData (class in cubie.odesystems) operator_apply (cubie.integrators.matrix_free_solvers.LinearSolverConfig attribute), [1] order (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.DIRKStep property) (cubie.integrators.algorithms.ERKStep property) (cubie.integrators.algorithms.FIRKStep property) (cubie.integrators.algorithms.GenericRosenbrockWStep property) (cubie.integrators.BackwardsEulerStep property) (cubie.integrators.CrankNicolsonStep property) (cubie.integrators.ExplicitEulerStep property)

output_array_heights (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputFunctions property) output_compile_flags (cubie.integrators.SingleIntegratorRun property) output_heights (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) output_length (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) output_length() (cubie.integrators.SingleIntegratorRun method) output_offsets() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) output_sizes() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) output_types (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) output_variables (cubie.batchsolving.solver.Solver property) OutputArrayContainer (class in cubie.batchsolving.arrays.BatchOutputArrays) OutputArrays (class in cubie.batchsolving.arrays.BatchOutputArrays) OutputConfig (class in cubie.outputhandling) OutputFunctions (class in cubie.outputhandling)

P

parameter_indices() (cubie.batchsolving.SystemInterface.SystemInterface method) parameter_labels() (cubie.batchsolving.SystemInterface.SystemInterface method) parameter_units (cubie.odesystems.SymbolicODE property) parameters (cubie.batchsolving.arrays.BatchInputArrays.InputArrayContainer attribute) (cubie.batchsolving.arrays.BatchInputArrays.InputArrays property) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.odesystems.BaseODE property) (cubie.odesystems.ODEData attribute) (cubie.odesystems.SystemSizes attribute) params() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) parse_string_for_params() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) Peaks (class in cubie.outputhandling.summarymetrics.peaks) per_summary_arrays (cubie.batchsolving.solveresult.SolveResult property) persistent_local_elements (cubie.integrators.SingleIntegratorRun property)

PIDStepControlConfig (class in cubie.integrators.step_control.adaptive_PID_controller) PIStepControlConfig (class in cubie.integrators.step_control.adaptive_PI_controller) precision (cubie.batchsolving.solver.Solver property) (cubie.integrators.matrix_free_solvers.LinearSolverConfig attribute) (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute) (cubie.integrators.step_control.fixed_step_controller.FixedStepControlConfig attribute) (cubie.odesystems.SystemValues attribute) (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics attribute) preconditioned_vec_location (cubie.integrators.matrix_free_solvers.LinearSolverConfig attribute), [1] preconditioner (cubie.integrators.matrix_free_solvers.LinearSolverConfig attribute), [1] preconditioner_order (cubie.integrators.ImplicitStepConfig attribute) prepare_jac (cubie.odesystems.ODECache attribute) prepare_jacobian_function (cubie.integrators.algorithms.generic_rosenbrock_w.RosenbrockWStepConfig attribute) preprocess_request() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) profileCUDA (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) proportion() (cubie.memory.mem_manager.MemoryManager method)

Q

queue_request() (cubie.memory.mem_manager.MemoryManager method)

R

register() (cubie.memory.mem_manager.MemoryManager method) register_buffers() (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep method) (cubie.integrators.algorithms.DIRKStep method) (cubie.integrators.algorithms.ERKStep method) (cubie.integrators.algorithms.FIRKStep method) (cubie.integrators.algorithms.GenericRosenbrockWStep method) (cubie.integrators.BackwardsEulerStep method) (cubie.integrators.CrankNicolsonStep method) (cubie.integrators.IVPLoop method) (cubie.integrators.matrix_free_solvers.LinearSolver method) (cubie.integrators.matrix_free_solvers.NewtonKrylov method) (cubie.integrators.step_control.base_step_controller.BaseStepController method) register_metric() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) (in module cubie.outputhandling.summarymetrics) register_with_memory_manager() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) registry (cubie.memory.mem_manager.MemoryManager attribute) reinit_streams() (cubie.memory.mem_manager.MemoryManager method) release_buffers() (cubie.batchsolving.arrays.BatchInputArrays.InputArrays method)

remove_entry() (cubie.odesystems.SystemValues method) request_allocation() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) reset() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) (cubie.batchsolving.arrays.BatchInputArrays.InputArrays method) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays method) residual_function (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute), [1] residual_location (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute), [1] residual_temp_location (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute), [1] resolve_variable_labels() (cubie.batchsolving.SystemInterface.SystemInterface method) RMS (class in cubie.outputhandling.summarymetrics.rms) ROSENBROCK_TABLEAUS (in module cubie.integrators.algorithms) RosenbrockTableau (class in cubie.integrators.algorithms.generic_rosenbrockw_tableaus) RosenbrockWStepConfig (class in cubie.integrators.algorithms.generic_rosenbrock_w) rtol (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig attribute) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController property) run() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method)

S

safety (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig property) (cubie.integrators.step_control.adaptive_step_controller.BaseAdaptiveStepController property) sample_summaries_every (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.IVPLoop property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputConfig property) save_counters (cubie.outputhandling.OutputConfig property) save_every (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.IVPLoop property) (cubie.integrators.SingleIntegratorRun property) save_functions() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) save_last (cubie.integrators.SingleIntegratorRun property) save_observables (cubie.outputhandling.OutputConfig property) save_state (cubie.outputhandling.OutputConfig property) save_state_fn (cubie.integrators.IVPLoop property) (cubie.integrators.SingleIntegratorRun property) save_state_func (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputFunctions property) save_summaries (cubie.outputhandling.OutputConfig property) save_summaries_fn (cubie.integrators.IVPLoop property) (cubie.integrators.SingleIntegratorRun property) save_summaries_func (cubie.integrators.SingleIntegratorRun property) save_summary_metrics_func (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputFunctions property) save_time (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) saved_observable_indices (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) saved_observables (cubie.batchsolving.solver.Solver property) saved_state_indices (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) saved_states (cubie.batchsolving.solver.Solver property) set_allocator() (cubie.memory.mem_manager.MemoryManager method) set_array() (cubie.batchsolving.arrays.BaseArrayManager.ArrayContainer method) set_array_runs() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) set_auto_limit_mode() (cubie.memory.mem_manager.MemoryManager method) set_cache_dir() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) (cubie.batchsolving.solver.Solver method) set_constant_value() (cubie.odesystems.SymbolicODE method) set_constants() (cubie.odesystems.BaseODE method) (cubie.odesystems.SymbolicODE method) set_initial_value() (cubie.odesystems.SymbolicODE method) set_limit_mode() (cubie.memory.mem_manager.MemoryManager method) set_manual_limit_mode() (cubie.memory.mem_manager.MemoryManager method) set_manual_proportion() (cubie.memory.mem_manager.MemoryManager method) set_memory_type() (cubie.batchsolving.arrays.BaseArrayManager.ArrayContainer method) set_parameter_value() (cubie.odesystems.SymbolicODE method) set_values() (cubie.odesystems.SystemValues method) set_verbosity() (cubie.batchsolving.solver.Solver method) settings_dict (cubie.integrators.AdaptivePIController property) (cubie.integrators.AdaptivePIDController property) (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.base_algorithm_step.BaseStepConfig property) (cubie.integrators.ImplicitStepConfig property) (cubie.integrators.matrix_free_solvers.LinearSolver property) (cubie.integrators.matrix_free_solvers.LinearSolverConfig property) (cubie.integrators.matrix_free_solvers.NewtonKrylov property) (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig property) (cubie.integrators.step_control.adaptive_step_controller.AdaptiveStepControlConfig property) (cubie.integrators.step_control.base_step_controller.BaseStepController property) (cubie.integrators.step_control.fixed_step_controller.FixedStepControlConfig property) (cubie.integrators.step_control.gustafsson_controller.GustafssonStepControlConfig property) shape (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray property) shared_memory_bytes (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.integrators.SingleIntegratorRun property) shared_memory_elements (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.integrators.SingleIntegratorRun property) shared_memory_needs_padding (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) SingleIntegratorRun (class in cubie.integrators) sizes (cubie.odesystems.BaseODE property) (cubie.odesystems.ODEData property) solve() (cubie.batchsolving.solver.Solver method) solve_info (cubie.batchsolving.solver.Solver property) solve_ivp() (in module cubie.batchsolving.solver) solve_settings (cubie.batchsolving.solveresult.SolveResult attribute) Solver (class in cubie.batchsolving.solver) solver_function (cubie.integrators.ImplicitStepConfig attribute) SolveResult (class in cubie.batchsolving.solveresult) SolverRetCodes (class in cubie.integrators.matrix_free_solvers) stage_accumulator_location (cubie.integrators.algorithms.generic_erk.ERKStepConfig attribute) stage_base_bt_location (cubie.integrators.matrix_free_solvers.NewtonKrylovConfig attribute), [1] stage_base_location (cubie.integrators.algorithms.generic_dirk.DIRKStepConfig attribute) stage_count (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.base_algorithm_step.BaseStepConfig property) (cubie.integrators.algorithms.FIRKStep property) (cubie.integrators.algorithms.generic_firk.FIRKStepConfig property) stage_driver_stack_location (cubie.integrators.algorithms.generic_firk.FIRKStepConfig attribute) stage_increment_location (cubie.integrators.algorithms.generic_dirk.DIRKStepConfig attribute) (cubie.integrators.algorithms.generic_firk.FIRKStepConfig attribute) stage_residual (cubie.odesystems.ODECache attribute)

stage_rhs_location (cubie.integrators.algorithms.generic_dirk.DIRKStepConfig attribute) (cubie.integrators.algorithms.generic_erk.ERKStepConfig attribute) (cubie.integrators.algorithms.generic_rosenbrock_w.RosenbrockWStepConfig attribute) stage_state_location (cubie.integrators.algorithms.generic_firk.FIRKStepConfig attribute) stage_store_location (cubie.integrators.algorithms.generic_rosenbrock_w.RosenbrockWStepConfig attribute) state (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrayContainer attribute) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) (cubie.batchsolving.BatchSolverConfig.ActiveOutputs attribute) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) state_indices() (cubie.batchsolving.SystemInterface.SystemInterface method) state_labels() (cubie.batchsolving.SystemInterface.SystemInterface method) state_summaries (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrayContainer attribute) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) (cubie.batchsolving.BatchSolverConfig.ActiveOutputs attribute) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) state_summaries_buffer_height (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) state_summaries_output_height (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) state_units (cubie.odesystems.SymbolicODE property) states (cubie.odesystems.BaseODE property) (cubie.odesystems.SystemSizes attribute) states_gui() (cubie.odesystems.SymbolicODE method) status_codes (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrayContainer attribute) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays property) (cubie.batchsolving.BatchSolverConfig.ActiveOutputs attribute) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.batchsolving.solveresult.SolveResult attribute) Std (class in cubie.outputhandling.summarymetrics.std) step (cubie.integrators.algorithms.base_algorithm_step.StepCache attribute) step_controller (cubie.integrators.SingleIntegratorRun property) step_controller_fn (cubie.integrators.IVPLoop property) step_function (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.IVPLoop property) STEP_TOO_SMALL (cubie.integrators.IntegratorReturnCodes attribute) StepCache (class in cubie.integrators.algorithms.base_algorithm_step) stream (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) stream_group (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) stream_groups (cubie.memory.mem_manager.MemoryManager attribute) stride_order (cubie.batchsolving.arrays.BaseArrayManager.ManagedArray attribute) SUCCESS (cubie.integrators.IntegratorReturnCodes attribute) (cubie.integrators.matrix_free_solvers.SolverRetCodes attribute) summaries_array (cubie.batchsolving.solveresult.SolveResult attribute) summaries_buffer_height() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) summaries_buffer_height_per_var (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) summaries_legend (cubie.batchsolving.solveresult.SolveResult attribute) summaries_length (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) summaries_length() (cubie.integrators.SingleIntegratorRun method) summaries_output_height() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) summaries_output_height_per_var (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) summarise_every (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.IVPLoop property) (cubie.integrators.SingleIntegratorRun property) summarise_observables (cubie.outputhandling.OutputConfig property) summarise_state (cubie.outputhandling.OutputConfig property) summarised_observable_indices (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) summarised_observables (cubie.batchsolving.solver.Solver property) summarised_state_indices (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) summarised_states (cubie.batchsolving.solver.Solver property) summary_legend_from_solver() (cubie.batchsolving.solveresult.SolveResult static method) summary_legend_per_variable (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) summary_metrics (in module cubie.outputhandling.summarymetrics) summary_types (cubie.outputhandling.OutputConfig property) summary_unit_modifications (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputConfig property) (cubie.outputhandling.OutputFunctions property) SummaryMetrics (class in cubie.outputhandling.summarymetrics.metrics) SymbolicODE (class in cubie.odesystems) sync_stream() (cubie.memory.mem_manager.MemoryManager method) system (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) system_sizes (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) (cubie.integrators.SingleIntegratorRun property) SystemInterface (class in cubie.batchsolving.SystemInterface) SystemSizes (class in cubie.odesystems) SystemValues (class in cubie.odesystems)

T

t0 (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property) tableau (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.generic_dirk.DIRKStepConfig attribute) (cubie.integrators.algorithms.generic_erk.ERKStepConfig attribute) (cubie.integrators.algorithms.generic_firk.FIRKStepConfig attribute) (cubie.integrators.algorithms.generic_rosenbrock_w.RosenbrockWStepConfig attribute) temp_location (cubie.integrators.matrix_free_solvers.LinearSolverConfig attribute), [1] threads_per_loop (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) threads_per_step (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep property) (cubie.integrators.algorithms.DIRKStep property) (cubie.integrators.algorithms.ERKStep property) (cubie.integrators.algorithms.FIRKStep property) (cubie.integrators.algorithms.GenericRosenbrockWStep property) (cubie.integrators.BackwardsEulerStep property) (cubie.integrators.CrankNicolsonStep property) (cubie.integrators.ExplicitEulerStep property) (cubie.integrators.SingleIntegratorRun property)

time (cubie.batchsolving.solveresult.SolveResult attribute) time_derivative_function (cubie.integrators.algorithms.generic_rosenbrock_w.RosenbrockWStepConfig attribute) time_derivative_rhs (cubie.odesystems.ODECache attribute) time_domain_array (cubie.batchsolving.solveresult.SolveResult attribute) time_domain_legend (cubie.batchsolving.solveresult.SolveResult attribute) time_domain_legend_from_solver() (cubie.batchsolving.solveresult.SolveResult static method) to_device() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) (cubie.memory.mem_manager.MemoryManager method) total_summary_buffer_size (cubie.outputhandling.OutputConfig property) totalmem (cubie.memory.mem_manager.MemoryManager attribute) typed_gamma_stages() (cubie.integrators.algorithms.generic_rosenbrockw_tableaus.RosenbrockTableau method)

U

unit_modifications() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) update() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) (cubie.batchsolving.arrays.BatchInputArrays.InputArrays method) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays method) (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) (cubie.batchsolving.solver.Solver method) (cubie.batchsolving.SystemInterface.SystemInterface method) (cubie.integrators.algorithms.base_algorithm_step.BaseAlgorithmStep method) (cubie.integrators.IVPLoop method) (cubie.integrators.matrix_free_solvers.LinearSolver method) (cubie.integrators.matrix_free_solvers.NewtonKrylov method) (cubie.integrators.step_control.base_step_controller.BaseStepController method) (cubie.odesystems.BaseODE method) (cubie.outputhandling.OutputFunctions method) (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method)

update_from_dict() (cubie.odesystems.SystemValues method) update_from_outputs_list() (cubie.outputhandling.OutputConfig method) update_from_solver() (cubie.batchsolving.arrays.BatchInputArrays.InputArrays method) (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays method) update_functions() (cubie.outputhandling.summarymetrics.metrics.SummaryMetrics method) update_host_arrays() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) update_memory_settings() (cubie.batchsolving.solver.Solver method) update_param_array_and_indices() (cubie.odesystems.SystemValues method) update_precisions() (cubie.odesystems.ODEData method) update_sizes() (cubie.batchsolving.arrays.BaseArrayManager.BaseArrayManager method) update_summaries_fn (cubie.integrators.IVPLoop property) (cubie.integrators.SingleIntegratorRun property) update_summaries_func (cubie.integrators.SingleIntegratorRun property) (cubie.outputhandling.OutputFunctions property) use_cached_auxiliaries (cubie.integrators.matrix_free_solvers.LinearSolver property) (cubie.integrators.matrix_free_solvers.LinearSolverConfig attribute), [1]

V

validation_passes() (cubie.outputhandling.OutputConfig method)

values_array (cubie.odesystems.SystemValues attribute) values_dict (cubie.odesystems.SystemValues attribute)

W

wait_for_writeback() (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel method) wait_pending() (cubie.batchsolving.arrays.BatchOutputArrays.OutputArrays method)

warmup (cubie.batchsolving.BatchSolverKernel.BatchSolverKernel property) (cubie.batchsolving.solver.Solver property)